A V4A `*** Add File:` operation is meant to create a new file. The apply
path called `write_file` unconditionally and `_validate_operations` had no
pre-check for ADD, so an Add targeting a path that already existed
overwrote the file with only the patch's `+` lines, returned success, and
emitted a `--- /dev/null` diff that hid what was lost. Models frequently
confuse Add with Update, so this destroyed existing file contents with no
error. The MOVE path already guards its destination against clobbering;
ADD now follows the same rule.
Makes a V4A `Add File` operation fail when its target already exists,
instead of silently overwriting the existing file. Validation now rejects
the operation before any write happens, so the two-phase
validate-then-apply contract ("no files were modified" on a validation
failure) holds for ADD as it already does for UPDATE/MOVE/DELETE. A
matching re-check in the apply phase closes the validate-to-apply race.
N/A
- [x] 🐛 Bug fix (non-breaking change that fixes an issue)
- `tools/patch_parser.py`: add an ADD branch in `_validate_operations`
that errors when `read_file_raw` finds an existing file, and a
defensive existence re-check in `_apply_add` before `write_file`,
mirroring the existing MOVE destination guard.
- `tests/tools/test_patch_parser.py`: add a test asserting an Add onto an
existing path fails validation and leaves the original bytes unwritten;
add `read_file_raw` to three ADD-path LSP fakes so they match the real
`file_ops` interface now exercised on ADD.
1. Build a V4A patch with `*** Add File: <path>` where `<path>` already
exists on disk.
2. Apply it via `apply_v4a_operations`. Before this change the file is
overwritten with the patch's `+` lines and the result is success;
after, the result is a validation failure and the file is untouched.
3. Run `scripts/run_tests.sh tests/tools/test_patch_parser.py` —
`TestApplyOperations::test_add_onto_existing_file_fails_and_preserves_contents`
covers the regression.
- [x] I've read the [Contributing Guide](https://github.com/NousResearch/hermes-agent/blob/main/CONTRIBUTING.md)
- [x] My commit messages follow [Conventional Commits](https://www.conventionalcommits.org/) (`fix(scope):`, `feat(scope):`, etc.)
- [x] I searched for [existing PRs](https://github.com/NousResearch/hermes-agent/pulls) to make sure this isn't a duplicate
- [x] My PR contains **only** changes related to this fix/feature (no unrelated commits)
- [x] I've run `pytest tests/ -q` and all tests pass
- [x] I've added tests for my changes (required for bug fixes, strongly encouraged for features)
- [x] I've tested on my platform: macOS 15 (Darwin 25.5.0)
- [x] I've updated relevant documentation (README, `docs/`, docstrings) — or N/A
- [x] I've updated `cli-config.yaml.example` if I added/changed config keys — or N/A
- [x] I've updated `CONTRIBUTING.md` or `AGENTS.md` if I changed architecture or workflows — or N/A
- [x] I've considered cross-platform impact (Windows, macOS) per the [compatibility guide](https://github.com/NousResearch/hermes-agent/blob/main/CONTRIBUTING.md#cross-platform-compatibility) — or N/A
- [x] I've updated tool descriptions/schemas if I changed tool behavior — or N/A
419 lines
20 KiB
Python
419 lines
20 KiB
Python
"""V4A patch parser/applier (codex, cline). ``*** Begin Patch``/``*** End Patch`` wrap ops:
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``*** Update File: p`` + hunks (``@@ hint @@``, `` ctx``, ``-old``, ``+new``); ``*** Add File: n``
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+ ``+`` lines; ``*** Delete File: o``; ``*** Move File: a -> b``. Entry points:
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``parse_v4a_patch(text) -> (ops, error)`` and ``apply_v4a_operations(ops, file_ops)``."""
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import contextlib
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import difflib
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import inspect
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import re
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from dataclasses import dataclass, field
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from enum import Enum
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from typing import Any, Callable, Dict, List, Optional, Tuple
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from tools.file_operations_common import PatchResult
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class OperationType(Enum):
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ADD = "add"
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UPDATE = "update"
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DELETE = "delete"
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MOVE = "move"
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@dataclass
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class HunkLine:
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prefix: str # ' ', '-', or '+'
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content: str
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@dataclass
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class Hunk:
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context_hint: Optional[str] = None
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lines: List[HunkLine] = field(default_factory=list)
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@dataclass
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class PatchOperation:
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operation: OperationType
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file_path: str
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new_path: Optional[str] = None # MOVE only
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hunks: List[Hunk] = field(default_factory=list)
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# Markers must occupy the whole line at column 0 so content lines that merely
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# mention the format ("+*** End Patch") can't truncate or reset the patch.
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_BEGIN_MARKER = re.compile(r'^\*\*\*\s*Begin\s+Patch\s*$')
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_END_MARKER = re.compile(r'^\*\*\*\s*End\s+Patch\s*$')
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_OP_MARKERS: List[Tuple[OperationType, re.Pattern]] = [
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(OperationType.UPDATE, re.compile(r'\*\*\*\s*Update\s+File:\s*(.+)')),
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(OperationType.ADD, re.compile(r'\*\*\*\s*Add\s+File:\s*(.+)')),
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(OperationType.DELETE, re.compile(r'\*\*\*\s*Delete\s+File:\s*(.+)')),
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(OperationType.MOVE, re.compile(r'\*\*\*\s*Move\s+File:\s*(.+?)\s*->\s*(.+)'))]
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_HINT_RE = re.compile(r'@@\s*(.+?)\s*@@')
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def parse_v4a_patch(patch_content: str) -> Tuple[List[PatchOperation], Optional[str]]:
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"""-> ``(operations, None)`` (empty patch = ``[]``, no error) or ``([], "Parse error: …")``."""
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# Tolerate CRLF: a stray ``\r`` would land in every HunkLine.content and defeat the markers.
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lines = [ln[:-1] if ln.endswith('\r') else ln for ln in patch_content.split('\n')]
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start_idx = -1 # parse from the top when no Begin marker is present
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end_idx = len(lines)
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for i, line in enumerate(lines):
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if _BEGIN_MARKER.match(line):
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start_idx = i
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elif _END_MARKER.match(line):
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end_idx = i
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break
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operations: List[PatchOperation] = []
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current_op: Optional[PatchOperation] = None
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current_hunk: Optional[Hunk] = None
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def _flush_hunk() -> None:
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if current_op and current_hunk and current_hunk.lines:
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current_op.hunks.append(current_hunk)
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def _flush() -> None:
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if current_op:
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_flush_hunk()
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operations.append(current_op)
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for line in lines[start_idx + 1:end_idx]:
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op_match = next(((kind, m) for kind, rx in _OP_MARKERS if (m := rx.match(line))), None)
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if op_match:
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kind, m = op_match
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_flush()
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current_op = PatchOperation(
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operation=kind,
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file_path=m.group(1).strip(),
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new_path=m.group(2).strip() if kind is OperationType.MOVE else None)
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# UPDATE hunks start lazily ('@@' or first hunk line); ADD collects all '+' lines
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# into one hunk; DELETE/MOVE are complete.
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current_hunk = Hunk() if kind is OperationType.ADD else None
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if kind in (OperationType.DELETE, OperationType.MOVE):
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operations.append(current_op)
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current_op = None
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elif line.startswith('@@'):
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if current_op:
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_flush_hunk()
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hint_match = _HINT_RE.match(line)
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current_hunk = Hunk(context_hint=hint_match.group(1) if hint_match else None)
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elif current_op and line:
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if current_hunk is None:
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current_hunk = Hunk()
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if line[0] in '+- ':
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current_hunk.lines.append(HunkLine(line[0], line[1:]))
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elif line[0] != '\\': # "\ No newline at end of file" marker is skipped
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current_hunk.lines.append(HunkLine(' ', line)) # implicit context line
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_flush()
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parse_errors: List[str] = []
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for op in operations:
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if not op.file_path:
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parse_errors.append("Operation with empty file path")
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if op.operation is OperationType.UPDATE and not op.hunks:
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parse_errors.append(f"UPDATE {op.file_path!r}: no hunks found")
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if op.operation is OperationType.MOVE and not op.new_path:
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parse_errors.append(
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f"MOVE {op.file_path!r}: missing destination path (expected 'src -> dst')")
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return ([], "Parse error: " + "; ".join(parse_errors)) if parse_errors else (operations, None)
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def _count_occurrences(text: str, pattern: str) -> int:
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"""Count occurrences of *pattern* in *text*, advancing one char per hit (overlaps count)."""
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return sum(1 for i in range(len(text) + 1) if text.startswith(pattern, i))
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def _split_hunk(hunk: Hunk) -> Tuple[List[str], List[str]]:
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"""``(search_lines, replace_lines)``: context+removed vs context+added."""
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return ([l.content for l in hunk.lines if l.prefix != '+'],
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[l.content for l in hunk.lines if l.prefix != '-'])
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def _no_match_hint(error: Optional[str], search_pattern: str, content: str) -> str:
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"""Best-effort 'Did you mean...' suffix; never lets a hint failure mask the real error."""
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with contextlib.suppress(Exception):
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from tools.fuzzy_match import format_no_match_hint
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return format_no_match_hint(error, 0, search_pattern, content)
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return ""
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def _hint_ambiguity(content: str, hint: str, tail: str = "") -> Tuple[int, str]:
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"""(occurrences, error) for an addition-only hunk's context hint; error is '' when unique."""
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n = _count_occurrences(content, hint)
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return n, f"context hint '{hint}' is ambiguous ({n} occurrences){tail}" if n > 1 else ""
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def _validate_operations(operations: List[PatchOperation], file_ops: Any) -> List[str]:
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"""Dry-run every operation -> error strings (empty = safe). UPDATE hunks are simulated in
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order so later hunks see post-earlier-hunk content, exactly as apply will."""
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from tools.fuzzy_match import fuzzy_find_and_replace, is_already_applied
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errors: List[str] = []
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real_change_count = 0
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# Overlay so inter-op state validates (a MOVE creating the path a later UPDATE targets).
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pending_content: dict = {}
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removed_paths: set = set()
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def _read(path: str) -> Tuple[Optional[str], Optional[str]]:
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if path in pending_content:
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return pending_content[path], None
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if path in removed_paths:
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return None, "file not found"
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r = file_ops.read_file_raw(path)
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return (None, r.error) if r.error else (r.content, None)
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def _validate_update(op: PatchOperation) -> None:
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nonlocal real_change_count
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simulated, read_err = _read(op.file_path)
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if read_err:
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errors.append(f"{op.file_path}: {read_err}")
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return
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for hunk_index, hunk in enumerate(op.hunks, start=1):
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search_lines, replace_lines = _split_hunk(hunk)
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if search_lines == replace_lines:
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# Context-only anchor hunks (models emit these between changes) are inert; identical
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# -/+ lines are skipped by apply as a no-op — neither may fail validation.
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real_change_count += any(l.prefix in '-+' for l in hunk.lines)
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continue
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real_change_count += 1
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if not search_lines: # addition-only: the context hint must be unique
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if hunk.context_hint:
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occurrences, ambiguous = _hint_ambiguity(simulated, hunk.context_hint)
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if occurrences == 0:
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errors.append(f"{op.file_path}: addition-only hunk context hint "
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f"'{hunk.context_hint}' not found")
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elif ambiguous:
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errors.append(f"{op.file_path}: addition-only hunk {ambiguous}")
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continue
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search_pattern, replacement = '\n'.join(search_lines), '\n'.join(replace_lines)
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new_simulated, count, _strategy, match_error = fuzzy_find_and_replace(
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simulated, search_pattern, replacement, replace_all=False)
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if count:
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simulated = new_simulated
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elif not is_already_applied(simulated or "", search_pattern, replacement):
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# Already-applied hunks are no-ops (apply performs the same skip).
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label = f"'{hunk.context_hint}'" if hunk.context_hint else "(no hint)"
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errors.append(
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f"{op.file_path}: hunk {hunk_index} {label} not found"
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+ (f" — {match_error}" if match_error else "")
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+ _no_match_hint(match_error, search_pattern, simulated))
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pending_content[op.file_path] = simulated
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def _remove(path: str) -> None:
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removed_paths.add(path)
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pending_content.pop(path, None)
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for op in operations:
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if op.operation == OperationType.UPDATE:
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_validate_update(op)
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continue
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real_change_count += 1
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if op.operation == OperationType.DELETE:
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if _read(op.file_path)[1]:
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errors.append(f"{op.file_path}: file not found for deletion")
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else:
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_remove(op.file_path)
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elif op.operation == OperationType.MOVE:
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if not op.new_path:
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errors.append(f"{op.file_path}: MOVE operation missing destination path")
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continue
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src_content, src_err = _read(op.file_path)
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if src_err:
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errors.append(f"{op.file_path}: source file not found for move")
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if not _read(op.new_path)[1]:
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errors.append(f"{op.new_path}: destination already exists — move would overwrite")
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elif not src_err: # only a cleanly-validated move updates the overlay
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pending_content[op.new_path] = src_content if src_content is not None else ""
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_remove(op.file_path)
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elif op.operation == OperationType.ADD:
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# An Add must create a NEW file. If the target already exists, write_file
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# would clobber it with only the patch's '+' lines and report success,
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# silently destroying the original contents (models frequently confuse Add
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# with Update). Reject it here so the two-phase contract holds, mirroring
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# the MOVE destination guard. Overlay-aware: an Add after a Delete of the
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# same path in this patch stays legal, and the added content enters the
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# overlay so later hunks against it validate.
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if not _read(op.file_path)[1]:
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errors.append(f"{op.file_path}: file already exists — use Update File, not Add File")
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else:
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removed_paths.discard(op.file_path)
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pending_content[op.file_path] = '\n'.join(
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line.content for hunk in op.hunks for line in hunk.lines if line.prefix == '+')
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if not errors and real_change_count == 0:
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errors.append("Patch contains no changes (only context lines were provided)")
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return errors
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# Every _apply_* returns (success, diff_or_error, lsp_diagnostics, lint_result).
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ApplyResult = Tuple[bool, str, Optional[str], Optional[dict]]
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def _fail(error: str) -> ApplyResult:
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return False, error, None, None
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def _written(result: Any, diff: str) -> ApplyResult:
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"""Outcome of a write: its error, else success with LSP/lint propagated from the WriteResult."""
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if result.error:
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return _fail(result.error)
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return True, diff, getattr(result, "lsp_diagnostics", None), getattr(result, "lint", None)
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def _unified_diff(path: str, old: str, new: Optional[str]) -> str:
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"""Unified diff ``a/path`` -> ``b/path`` (``new=None`` = deletion, ``/dev/null``)."""
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return ''.join(difflib.unified_diff(
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old.splitlines(keepends=True), [] if new is None else new.splitlines(keepends=True),
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fromfile=f"a/{path}", tofile="/dev/null" if new is None else f"b/{path}"))
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def apply_v4a_operations(operations: List[PatchOperation], file_ops: Any) -> PatchResult:
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"""Two-phase: validate everything, then apply (atomic on validation failure). A phase-2
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failure (validate/apply race) carries a ``git diff`` note since state may be inconsistent.
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``file_ops`` needs read_file_raw/write_file/delete_file/move_file."""
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def _bullets(errs: List[str]) -> str:
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return "\n".join(f" • {e}" for e in errs)
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if errors := _validate_operations(operations, file_ops):
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return PatchResult(
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success=False,
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error="Patch validation failed (no files were modified):\n" + _bullets(errors))
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files: Dict[str, List[str]] = {"created": [], "deleted": [], "modified": []}
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all_diffs: List[str] = []
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# V4A bypasses write_file's WriteResult plumbing: LSP diagnostics and lint propagate per file.
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lsp_blocks: List[str] = []
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lint_results: Dict[str, dict] = {}
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for op in operations:
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handler, verb, bucket = _APPLY_DISPATCH[op.operation]
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try:
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ok, payload, lsp, lint = handler(op, file_ops)
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except Exception as e:
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ok, payload = None, str(e)
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if not ok:
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prefix = f"Failed to {verb}" if ok is False else "Error processing"
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errors.append(f"{prefix} {op.file_path}: {payload}")
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continue
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is_move = op.operation is OperationType.MOVE
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files[bucket].append(f"{op.file_path} -> {op.new_path}" if is_move else op.file_path)
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all_diffs.append(payload)
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if lsp:
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lsp_blocks.append(lsp)
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if lint:
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lint_results[op.file_path] = lint
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# Each LSP block carries its own <diagnostics file="..."> header; joining keeps attribution.
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return PatchResult(
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success=not errors,
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error=("Apply phase failed (state may be inconsistent — run `git diff` to assess):\n"
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+ _bullets(errors)) if errors else None,
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diff='\n'.join(all_diffs),
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files_modified=files["modified"], files_created=files["created"], files_deleted=files["deleted"],
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lint=lint_results or None, lsp_diagnostics="\n\n".join(lsp_blocks) or None)
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def _write_file_accepts_pre_content(file_ops: Any) -> bool:
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"""Whether ``file_ops.write_file`` accepts ``pre_content`` — read from the signature, not by
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catching TypeError around the call, so a TypeError raised *inside* it can't double-write."""
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try:
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params = inspect.signature(file_ops.write_file).parameters
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except (TypeError, ValueError):
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return False
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return "pre_content" in params or any(
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p.kind is inspect.Parameter.VAR_KEYWORD for p in params.values())
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def _apply_add(op: PatchOperation, file_ops: Any) -> ApplyResult:
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"""Create a file from the hunks' '+' lines. Fails closed when the target already
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exists: validation confirmed the path was free (or freed by an earlier DELETE in
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this patch, which has already applied by now), so an existing file here is a
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validate/apply race — never clobber."""
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read_back = file_ops.read_file_raw(op.file_path)
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if not read_back.error:
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return _fail(f"{op.file_path}: file already exists — use Update File, not Add File")
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content_lines = [line.content for hunk in op.hunks for line in hunk.lines if line.prefix == '+']
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result = file_ops.write_file(op.file_path, '\n'.join(content_lines))
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diff = f"--- /dev/null\n+++ b/{op.file_path}\n" + '\n'.join(f"+{line}" for line in content_lines)
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return _written(result, diff)
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def _apply_delete(op: PatchOperation, file_ops: Any) -> ApplyResult:
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"""Delete a file, producing a real unified diff of the removed content."""
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read_result = file_ops.read_file_raw(op.file_path) # re-read guards validate/apply races
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if read_result.error:
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return _fail(f"Cannot delete {op.file_path}: file not found")
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result = file_ops.delete_file(op.file_path)
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diff = _unified_diff(op.file_path, read_result.content, None) or f"# Deleted: {op.file_path}"
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return _fail(result.error) if result.error else (True, diff, None, None)
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def _apply_move(op: PatchOperation, file_ops: Any) -> ApplyResult:
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result = file_ops.move_file(op.file_path, op.new_path)
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return _fail(result.error) if result.error else (
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True, f"# Moved: {op.file_path} -> {op.new_path}", None, None)
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def _insert_addition_only(new_content: str, hunk: Hunk, insert_text: str) -> Tuple[Optional[str], Optional[str]]:
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"""Place an addition-only hunk after its context hint (or at EOF). Returns (content, error)."""
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if hunk.context_hint:
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occurrences, ambiguous = _hint_ambiguity(
|
|
new_content, hunk.context_hint, " — provide a more unique hint")
|
|
if ambiguous:
|
|
return None, f"Addition-only hunk: {ambiguous}"
|
|
if occurrences == 1:
|
|
eol = new_content.find('\n', new_content.find(hunk.context_hint))
|
|
if eol == -1:
|
|
return new_content + '\n' + insert_text, None
|
|
return new_content[:eol + 1] + insert_text + '\n' + new_content[eol + 1:], None
|
|
# No hint / hint not found — append at end as a safe fallback.
|
|
return new_content.rstrip('\n') + '\n' + insert_text + '\n', None
|
|
|
|
|
|
def _apply_update(op: PatchOperation, file_ops: Any) -> ApplyResult:
|
|
"""Apply each hunk via fuzzy replace, then write once."""
|
|
from tools.fuzzy_match import fuzzy_find_and_replace, is_already_applied
|
|
read_result = file_ops.read_file_raw(op.file_path) # raw: no line numbers / truncation
|
|
if read_result.error:
|
|
return _fail(f"Cannot read file: {read_result.error}")
|
|
current_content = new_content = read_result.content
|
|
for hunk in op.hunks:
|
|
search_lines, replace_lines = _split_hunk(hunk)
|
|
if search_lines and search_lines == replace_lines:
|
|
continue
|
|
search_pattern, replacement = '\n'.join(search_lines), '\n'.join(replace_lines)
|
|
if not search_lines:
|
|
new_content, err = _insert_addition_only(new_content, hunk, replacement)
|
|
if err:
|
|
return _fail(err)
|
|
continue
|
|
new_content, count, _strategy, error = fuzzy_find_and_replace(
|
|
new_content, search_pattern, replacement, replace_all=False)
|
|
if not (error and count == 0):
|
|
continue
|
|
# Retry inside a window around the context hint, if any.
|
|
hint_pos = new_content.find(hunk.context_hint) if hunk.context_hint else -1
|
|
if hint_pos != -1:
|
|
window_start = max(0, hint_pos - 500)
|
|
window_end = min(len(new_content), hint_pos + 2000)
|
|
window_new, count, _strategy, error = fuzzy_find_and_replace(
|
|
new_content[window_start:window_end], search_pattern, replacement, replace_all=False)
|
|
if count > 0:
|
|
new_content = new_content[:window_start] + window_new + new_content[window_end:]
|
|
error = None
|
|
if error:
|
|
# Mirror validation's already-applied skip, else the two phases disagree and fail here.
|
|
if is_already_applied(new_content, search_pattern, replacement):
|
|
continue
|
|
hint = _no_match_hint(error, search_pattern, new_content)
|
|
return _fail(f"Could not apply hunk: {error}" + hint)
|
|
# Pass pre_content to skip a redundant re-read inside write_file when supported.
|
|
extra = {"pre_content": current_content} if _write_file_accepts_pre_content(file_ops) else {}
|
|
write_result = file_ops.write_file(op.file_path, new_content, **extra)
|
|
return _written(write_result, _unified_diff(op.file_path, current_content, new_content))
|
|
|
|
|
|
# operation -> (handler, verb for error text, files_* bucket)
|
|
_APPLY_DISPATCH: Dict[OperationType, Tuple[Callable[[PatchOperation, Any], ApplyResult], str, str]] = {
|
|
OperationType.ADD: (_apply_add, "add", "created"),
|
|
OperationType.DELETE: (_apply_delete, "delete", "deleted"),
|
|
OperationType.MOVE: (_apply_move, "move", "modified"),
|
|
OperationType.UPDATE: (_apply_update, "update", "modified"),
|
|
}
|