546 lines
22 KiB
Python
546 lines
22 KiB
Python
"""state.db file-level health helpers.
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Split out of ``hermes_state.py``: header probes (application_id / zeroed-file
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detection), deleted-WAL-sidecar holder scans, quarantine of zeroed or
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lock-poisoned databases, ``collect_state_db_stats`` and holder-process
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classification. Every name is re-imported into ``hermes_state`` so
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``hermes_state.<name>`` keeps resolving — and tests that monkeypatch it keep
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intercepting, because intra-module calls to patched helpers go through a
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lazy ``from hermes_state import ...`` at call time.
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"""
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from __future__ import annotations
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import contextlib
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import json
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import logging
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import os
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import sqlite3
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import struct
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import sys
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import threading
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import time
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from pathlib import Path
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from typing import Any, Dict, List, Optional, Set, Tuple
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from hermes_state_common import (
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FTS_REBUILD_DEFERRAL_KEY,
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stat_db_file_identity as _stat_db_file_identity,
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)
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# Log-record parity with the origin module (caplog tests pin "hermes_state").
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logger = logging.getLogger("hermes_state")
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# _read_sqlite_application_id runs on EVERY write via _raise_if_db_replaced,
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# against the LIVE state.db. A bare open()/read()/close() there is the
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# howtocorrupt §2.2 bug: close() cancels every POSIX advisory lock this
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# process holds on the file — one probe call drops the WAL-mode DMS shared
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# lock the writer connection holds (see hermes_cli/sqlite_safe_read.py). With
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# the DMS lock gone, a fresh opener in another process can treat this writer
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# as dead and rerun WAL-index recovery underneath it.
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#
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# The probe therefore reads through a per-path fd cached for the life of the
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# process: opening an fd never cancels locks (only close() does), and
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# os.pread takes no shared file position. When the path is re-pointed at a
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# new inode (the very replacement this probe exists to detect), the stale fd
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# is RETIRED, never closed — closing it would cancel the live connection's
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# locks on the old file. Replacement events are rare and halt writes anyway,
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# so the leak is bounded.
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_HEADER_PROBE_LOCK = threading.Lock()
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_HEADER_PROBE_FDS: "dict[str, tuple[int, int, int]]" = {} # key -> (fd, dev, ino)
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_RETIRED_HEADER_PROBE_FDS: "list[int]" = [] # intentionally never closed
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_FTS_TABLE_NAMES = ("messages_fts", "messages_fts_trigram", "messages_fts_cjk")
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def _pread_db_header(db_path: Path, length: int) -> "Optional[bytes]":
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"""Lock-safe raw header read of a possibly-live SQLite database.
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POSIX: pread from a cached, never-closed fd (rebound when the path names
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a new inode). Windows: plain read — advisory-lock cancellation is a
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POSIX-only hazard and msvcrt locks do not share the failure mode.
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"""
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from hermes_state import _IS_WINDOWS
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if _IS_WINDOWS:
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try:
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with db_path.open("rb") as handle:
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return handle.read(length)
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except OSError:
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return None
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key = str(db_path)
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try:
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st = os.stat(db_path)
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except OSError:
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return None
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with _HEADER_PROBE_LOCK:
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cached = _HEADER_PROBE_FDS.get(key)
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if cached is not None and (cached[1], cached[2]) != (st.st_dev, st.st_ino):
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# Path re-pointed at a new file. Retire (never close) the old fd.
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_RETIRED_HEADER_PROBE_FDS.append(cached[0])
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cached = None
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del _HEADER_PROBE_FDS[key]
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if cached is None:
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try:
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fd = os.open(db_path, os.O_RDONLY)
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except OSError:
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return None
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try:
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fst = os.fstat(fd)
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except OSError:
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_RETIRED_HEADER_PROBE_FDS.append(fd)
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return None
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cached = _HEADER_PROBE_FDS[key] = (fd, fst.st_dev, fst.st_ino)
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try:
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return os.pread(cached[0], length, 0)
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except OSError:
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return None
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def _read_sqlite_application_id(db_path: Path) -> "Optional[int]":
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"""Read application_id from the SQLite header without opening a connection.
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Routed through :func:`_pread_db_header`, which never issues a ``close()``
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that would cancel this process's POSIX locks on the file.
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"""
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from hermes_state import _STATE_DB_APPLICATION_ID_OFFSET
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end = _STATE_DB_APPLICATION_ID_OFFSET + 4
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header = _pread_db_header(db_path, end)
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if header is None or len(header) < end or header[:16] != b"SQLite format 3\x00":
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return None
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return int(struct.unpack(">I", header[_STATE_DB_APPLICATION_ID_OFFSET:end])[0])
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def _stat_sqlite_sidecar_identity(db_path: Path) -> Dict[str, tuple]:
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"""Snapshot ``(st_dev, st_ino)`` for existing WAL/SHM sidecars."""
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identities: Dict[str, tuple] = {}
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base = os.fspath(db_path)
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for suffix in ("-wal", "-shm"):
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ident = _stat_db_file_identity(Path(base + suffix))
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if ident is not None:
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identities[suffix] = ident
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return identities
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def _canonical_sqlite_path(path: str) -> str:
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"""Normalize a /proc fd target, stripping the Linux `` (deleted)`` suffix."""
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return os.path.normcase(os.path.abspath(path.removesuffix(" (deleted)")))
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def _watched_sqlite_sidecar_paths(db_path) -> Set[str]:
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base = os.path.abspath(os.fspath(db_path))
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return {_canonical_sqlite_path(base + "-wal"), _canonical_sqlite_path(base + "-shm")}
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def _iter_proc_fd_targets():
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"""Yield ``(pid, readlink target)`` for every readable ``/proc/<pid>/fd`` entry."""
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for pid_str in os.listdir("/proc"):
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if not pid_str.isdigit():
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continue
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fd_dir = f"/proc/{pid_str}/fd"
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try:
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fds = os.listdir(fd_dir)
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except OSError:
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continue # process gone or not ours
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for fd in fds:
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try:
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yield int(pid_str), os.readlink(f"{fd_dir}/{fd}")
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except OSError:
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continue
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def iter_deleted_sqlite_sidecar_holders(db_path) -> List[Tuple[int, str]]:
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"""Return processes holding an unlinked ``state.db-wal`` / ``-shm``.
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Linux-only (``/proc/<pid>/fd`` readlink). Windows and other hosts
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return ``[]`` — Windows cannot unlink a sidecar another process still
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holds, and macOS does not use the `` (deleted)`` suffix.
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The scan includes this process: on the SessionDB open/write refuse
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path, the in-process writer that still holds the orphan inode is the
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one that must not mint a replacement WAL (and must stop committing).
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``_foreign_state_db_holders`` keeps skipping this PID for FTS
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maintenance so a process does not block its own optional repair.
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"""
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if not sys.platform.startswith("linux"):
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return []
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holders: List[Tuple[int, str]] = []
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watched = _watched_sqlite_sidecar_paths(db_path)
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try:
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for pid, target in _iter_proc_fd_targets():
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if " (deleted)" in target and _canonical_sqlite_path(target) in watched:
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holders.append((pid, target))
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except Exception as exc:
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logger.debug("deleted-WAL holder scan failed for %s: %s", db_path, exc)
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return holders
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def refuse_deleted_wal_generation(db_path) -> None:
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"""Raise if any process holds a deleted WAL/SHM generation for *db_path*.
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Called *before* ``sqlite3.connect`` so a second opener cannot mint a
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replacement WAL inode while a live writer still holds the orphan.
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"""
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from hermes_state import DeletedWalGenerationError, _DELETED_WAL_GENERATION_MSG
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if not iter_deleted_sqlite_sidecar_holders(db_path):
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return
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logger.error(_DELETED_WAL_GENERATION_MSG)
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raise DeletedWalGenerationError(_DELETED_WAL_GENERATION_MSG)
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def _connect_tracked_db(path, tracking_path=None, **kwargs):
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"""``sqlite3.connect`` that registers the open fd for lock-safety.
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While a connection is live, byte-level probes of the same file are
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refused: an ``open()``/``close()`` cancels every POSIX advisory lock this
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process holds on it -- including a running VACUUM's EXCLUSIVE lock.
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Released automatically on ``close()``.
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The ONLY tolerated fallback is the helper being absent entirely
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(scaffold/embed installs that ship hermes_state without hermes_cli). A
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real connection failure must propagate: silently retrying an *untracked*
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connect would disable the guard for the lifetime of that connection.
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"""
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try:
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from hermes_cli.sqlite_safe_read import connect_tracked
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except ImportError:
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logger.debug(
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"hermes_cli.sqlite_safe_read unavailable; opening %s untracked "
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"(byte-probe guard inactive in this install)",
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path,
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)
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return sqlite3.connect(str(path), **kwargs)
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# Open through THIS module's sqlite3.connect so callers (and tests) that
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# patch hermes_state.sqlite3.connect keep control of connection creation;
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# the helper still owns tracking.
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return connect_tracked(path, tracking_path=tracking_path, connect_fn=sqlite3.connect, **kwargs)
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def is_zeroed_state_db(path: Path, *, probe_bytes: int = 100, force: bool = False) -> bool:
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"""Detect the zeroed state.db signature (0-byte or NUL header).
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Byte-level probe, so it is only safe BEFORE any connection to *path*
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exists in this process: ``close()`` cancels every POSIX advisory lock the
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process holds on the file, which can pull the EXCLUSIVE lock out from
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under a running VACUUM and corrupt the database. The read is routed
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through ``read_header_bytes_preopen``, which refuses (returning False
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here) once a connection is live. Pass ``force=True`` only for offline
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files -- quarantined copies, snapshots, archives.
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Prefer ``hermes_cli.backup.is_zeroed_sqlite_file`` when available; this
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local copy keeps SessionDB openable without importing the CLI package
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in constrained embed paths.
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"""
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try:
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from hermes_cli.backup import is_zeroed_sqlite_file
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return is_zeroed_sqlite_file(path, probe_bytes=probe_bytes, force=force)
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except Exception:
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pass
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try:
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if not path.is_file():
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# Special files (FIFO, device, socket) are never "zeroed", and
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# probing a FIFO would block until a writer appears.
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return False
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size = path.stat().st_size
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except OSError:
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return False
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if size < 0:
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return False
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from hermes_cli.sqlite_safe_read import has_live_connection, read_header_bytes_preopen
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if not force and has_live_connection(path):
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return False
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head = read_header_bytes_preopen(path, length=max(16, probe_bytes), force=force)
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if head is None:
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return False
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if len(head) == 0:
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return True
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if head.startswith(b"SQLite format 3"):
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return False
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return all(byte == 0 for byte in head)
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@contextlib.contextmanager
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def quarantine_cross_process_lock(path: Path, timeout: float = 5.0):
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"""Acquire the cross-process lock for path.quarantine.lock."""
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import platform
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lock_path = path.with_name(path.name + ".quarantine.lock")
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lock_path.parent.mkdir(parents=True, exist_ok=True)
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handle = lock_path.open("a+b")
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acquired = False
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try:
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if platform.system() == "Windows":
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import msvcrt
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def _try_lock():
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handle.seek(0)
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msvcrt.locking(handle.fileno(), msvcrt.LK_NBLCK, 1)
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def _unlock():
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handle.seek(0)
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msvcrt.locking(handle.fileno(), msvcrt.LK_UNLCK, 1)
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else:
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import fcntl
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def _try_lock():
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fcntl.flock(handle.fileno(), fcntl.LOCK_EX | fcntl.LOCK_NB)
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def _unlock():
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fcntl.flock(handle.fileno(), fcntl.LOCK_UN)
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deadline = time.monotonic() + timeout
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while True:
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try:
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_try_lock()
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acquired = True
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break
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except OSError:
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if time.monotonic() >= deadline:
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break
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time.sleep(0.020)
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yield acquired
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finally:
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try:
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if acquired:
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_unlock()
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except (OSError, AttributeError):
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pass
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finally:
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handle.close()
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def quarantine_zeroed_state_db(path: Path, *, already_locked: bool = False) -> Optional[Path]:
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"""Move a zeroed state.db aside (preserve bytes) and return quarantine path.
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Uses a cross-process lock so two concurrent startups cannot race: the first
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process moves the zeroed file and the second re-checks under the lock,
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finding the file already gone (or a fresh DB in its place) instead of
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clobbering the quarantine.
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"""
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def _do_quarantine():
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if not path.exists():
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logger.info("quarantine_zeroed_state_db: %s already moved by another process", path)
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return None
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if not is_zeroed_state_db(path):
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logger.info(
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"quarantine_zeroed_state_db: %s is no longer zeroed (another "
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"process quarantined it and a fresh DB was created)",
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path,
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)
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return None
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try:
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ts = time.strftime("%Y%m%d-%H%M%S")
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except Exception:
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ts = "unknown"
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stem = f"{path.name}.zeroed-{ts}-{os.getpid()}"
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dest = path.with_name(f"{stem}.bak")
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n = 0
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while dest.exists():
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n += 1
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dest = path.with_name(f"{stem}-{n}.bak")
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try:
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path.rename(dest)
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except OSError as exc:
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logger.error("Failed to quarantine zeroed %s: %s", path, exc)
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return None
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for suffix in ("-wal", "-shm"):
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side = Path(str(path) + suffix)
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if side.exists():
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try:
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side.rename(Path(str(dest) + suffix))
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except OSError:
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pass
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return dest
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if already_locked:
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return _do_quarantine()
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with quarantine_cross_process_lock(path) as acquired:
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if not acquired:
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logger.error(
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"quarantine lock for %s not acquired within 5s — refusing to "
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"quarantine without the cross-process lock. The zeroed file "
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"is left in place. If sessions fail to load, restore from "
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"state-snapshots via `hermes snapshot list` / "
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"`hermes snapshot restore <id>`.",
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path,
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)
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return None
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return _do_quarantine()
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def collect_state_db_stats(db_path: Path) -> Dict[str, Any]:
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"""Best-effort, strictly read-only stats snapshot of a state.db file.
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Opens the database with ``mode=ro`` (URI) and a short timeout so it can
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run against a *live* database held by a gateway without ever taking a
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write lock or mutating the file. Every field is collected independently:
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a failed pragma/SELECT yields ``None`` for that field, and the helper
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itself never raises. Deliberately does NOT instantiate :class:`SessionDB`
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— its constructor runs schema DDL, which a diagnostics probe must never do.
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Returned keys (all present, any may be None on failure): ``page_count``,
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``page_size``, ``freelist_count``, ``logical_size_bytes`` (page_count *
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page_size), ``wal_size_bytes`` (stat of ``<db>-wal``, 0 when absent),
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``journal_mode``, ``messages`` / ``sessions`` row counts, ``fts_tables``
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({name: present}), ``fts_storage_version`` (None = legacy inline layout),
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``fts_rebuild_pending`` (deferred backfill unfinished),
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``fts_rebuild_high_water`` / ``fts_rebuild_progress`` raw ints, and
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``fts_rebuild_deferral`` (durable blocked-repair diagnostic).
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"""
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from hermes_state import _connect_tracked_db
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stats: Dict[str, Any] = dict.fromkeys((
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"page_count", "page_size", "freelist_count", "logical_size_bytes", "wal_size_bytes",
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"journal_mode", "messages", "sessions", "fts_tables", "fts_storage_version",
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"fts_rebuild_pending", "fts_rebuild_high_water", "fts_rebuild_progress",
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"fts_rebuild_deferral",
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))
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# WAL sidecar size needs no connection at all.
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try:
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wal_path = Path(str(db_path) + "-wal")
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stats["wal_size_bytes"] = wal_path.stat().st_size if wal_path.exists() else 0
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except OSError:
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pass
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try:
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# mode=ro refuses to create the file and refuses every write; a short
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# timeout keeps doctor snappy when a writer holds the lock. The tracked
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# connect lets byte-probe helpers see this connection and refuse raw
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# opens that could cancel our POSIX locks mid-read.
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conn = _connect_tracked_db(
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f"file:{Path(db_path)}?mode=ro", tracking_path=Path(db_path), uri=True, timeout=2.0
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)
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except Exception as exc:
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logger.debug("collect_state_db_stats: cannot open %s read-only: %s", db_path, exc)
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return stats
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def _scalar(sql: str, params=()) -> Any:
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try:
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row = conn.execute(sql, params).fetchone()
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return row[0] if row else None
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except Exception:
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return None
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def _int(value) -> Optional[int]:
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return int(value) if value is not None else None
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def _meta_int(key: str) -> Optional[int]:
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try:
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return _int(_scalar("SELECT value FROM state_meta WHERE key = ?", (key,)))
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except Exception:
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return None
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try:
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stats["page_count"] = _int(_scalar("PRAGMA page_count"))
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stats["page_size"] = _int(_scalar("PRAGMA page_size"))
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if stats["page_count"] is not None and stats["page_size"] is not None:
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stats["logical_size_bytes"] = stats["page_count"] * stats["page_size"]
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stats["freelist_count"] = _int(_scalar("PRAGMA freelist_count"))
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jm = _scalar("PRAGMA journal_mode")
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stats["journal_mode"] = str(jm) if jm is not None else None
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stats["messages"] = _int(_scalar("SELECT COUNT(*) FROM messages"))
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stats["sessions"] = _int(_scalar("SELECT COUNT(*) FROM sessions"))
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# FTS table presence via sqlite_master (never SELECTs from the
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# virtual tables themselves — a corrupt index must not fail stats).
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try:
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names = {
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row[0]
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for row in conn.execute(
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"SELECT name FROM sqlite_master WHERE type = 'table' "
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"AND name IN (?, ?, ?)",
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_FTS_TABLE_NAMES,
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).fetchall()
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}
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stats["fts_tables"] = {t: (t in names) for t in _FTS_TABLE_NAMES}
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except Exception:
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pass
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|
# Raw state_meta reads — cheap, and independent of SessionDB.
|
|
stats["fts_storage_version"] = _meta_int("fts_storage_version")
|
|
high_water = _meta_int("fts_rebuild_high_water")
|
|
progress = _meta_int("fts_rebuild_progress")
|
|
stats["fts_rebuild_high_water"] = high_water
|
|
stats["fts_rebuild_progress"] = progress
|
|
stats["fts_rebuild_pending"] = False if high_water is None else (progress or 0) < high_water
|
|
try:
|
|
row = conn.execute(
|
|
"SELECT value FROM state_meta WHERE key = ? LIMIT 1", (FTS_REBUILD_DEFERRAL_KEY,)
|
|
).fetchone()
|
|
if row:
|
|
parsed = json.loads(row[0])
|
|
if isinstance(parsed, dict):
|
|
stats["fts_rebuild_deferral"] = parsed
|
|
except Exception:
|
|
pass
|
|
finally:
|
|
try:
|
|
conn.close()
|
|
except Exception:
|
|
pass
|
|
return stats
|
|
|
|
|
|
def count_db_holders(db_path: Path) -> Optional[int]:
|
|
"""Best-effort count of processes holding ``db_path`` open (Linux only).
|
|
|
|
Scans ``/proc/*/fd`` symlinks for the resolved database path. Returns
|
|
the number of distinct PIDs with the file open, or ``None`` on any
|
|
error or on non-Linux platforms. Never raises; no lsof dependency.
|
|
Unreadable per-process fd dirs (other users' processes without root)
|
|
are silently skipped, so the count is a lower bound.
|
|
"""
|
|
try:
|
|
if not sys.platform.startswith("linux"):
|
|
return None
|
|
target = os.path.realpath(str(db_path))
|
|
return len({pid for pid, link in _iter_proc_fd_targets() if link == target})
|
|
except Exception:
|
|
return None
|
|
|
|
|
|
def _is_inactive_orphan_desktop_holder(
|
|
*, ppid: int, age_seconds: float, min_age_seconds: float, ephemeral_backend: bool,
|
|
connection_statuses: List[str],
|
|
) -> bool:
|
|
"""Pure safety predicate for the narrow Desktop holder reap."""
|
|
return (
|
|
ppid in (0, 1)
|
|
and age_seconds >= min_age_seconds
|
|
and ephemeral_backend
|
|
and "ESTABLISHED" not in connection_statuses
|
|
)
|
|
|
|
|
|
def _concrete_state_db_holder_pids(db_path: Path, holders: List[Tuple[int, str]]) -> List[int]:
|
|
"""Return unique PIDs proven to hold this DB or one of its sidecars."""
|
|
canonical_db = os.path.normcase(os.path.abspath(os.fspath(db_path)))
|
|
watched = {canonical_db, canonical_db + "-wal", canonical_db + "-shm"}
|
|
pids: List[int] = []
|
|
for pid, path in holders:
|
|
if pid <= 0 or pid in pids or _canonical_sqlite_path(path) not in watched:
|
|
continue
|
|
pids.append(pid)
|
|
return pids
|
|
|
|
|
|
def _read_proc_cmdline(pid: int) -> Optional[str]:
|
|
"""Read /proc/<pid>/cmdline (world-readable even when the fd table is not)
|
|
as a space-joined string; None when unreadable (exited, hidepid mount)."""
|
|
try:
|
|
with open(f"/proc/{pid}/cmdline", "rb") as f:
|
|
raw = f.read()
|
|
if not raw:
|
|
return None
|
|
return raw.replace(b"\x00", b" ").decode("utf-8", "replace").strip()
|
|
except OSError:
|
|
return None
|
|
|
|
|
|
_HERMES_CMDLINE_MARKERS = ("hermes_cli.main", "hermes_cli/main", "hermes serve",
|
|
"hermes-agent", "hermes gateway", "hermes chat")
|
|
|
|
|
|
def _looks_like_hermes(cmdline: str) -> bool:
|
|
"""Heuristic: does this cmdline look like a Hermes process? Decides whether
|
|
an uninspectable process (fd table unreadable, different user) is treated
|
|
as a potential state.db holder; system daemons are not flagged."""
|
|
lower = cmdline.lower()
|
|
return any(marker in lower for marker in _HERMES_CMDLINE_MARKERS)
|