Copilot CLI 1.0.78 reworked /rewind to restore only the files the agent
changed, 'skipping any file whose contents no longer match what Copilot
last wrote'. This ports that protection to Hermes checkpoints:
- tools/checkpoint_manager.py: per-project agent-write ledger
(sha256 of every landed write_file/patch), safe_restore_plan()
classifier, and restore(safe=True) that reverts only agent-authored
changes, deletes agent-created files, and preserves user hand-edits.
Empty ledger (pre-existing stores) falls back to the classic full
restore.
- run_agent.py: feed the ledger from _record_file_mutation_result on
every landed mutation (zero new hooks; rides the existing verifier).
- CLI + gateway /rollback: safe mode is the default; --all/--force
restores everything; skipped files are reported with a hint.
- 17 locales: new gateway.rollback.kept_user_edits key.
- Docs: checkpoints-and-rollback.md updated.
- Tests: 7 new cases incl. user-edit preservation, post-agent user
tweaks, agent-created file removal, empty-ledger fallback.